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Merge pull request #1522 from broadinstitute/rhl_sam_error_1427 

Make exit system file type message generic
This commit is contained in:
Ron Levine 2016-11-23 11:05:58 -05:00 committed by GitHub
parent 055d653bc2 262c08aee3
commit 7c8f97fdb9
1 changed files with 2 additions and 2 deletions
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4
public/gatk-utils/src/main/java/org/broadinstitute/gatk/utils/commandline/CommandLineProgram.java
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@ -457,9 +457,9 @@ public abstract class CommandLineProgram {
throw new ReviewedGATKException("SamException found with no message!", t); throw new ReviewedGATKException("SamException found with no message!", t);
errorPrintf("------------------------------------------------------------------------------------------%n"); errorPrintf("------------------------------------------------------------------------------------------%n");
errorPrintf("A BAM/CRAM ERROR has occurred (version %s): %n", getVersionNumber()); errorPrintf("AN INPUT FILE ERROR has occurred (version %s): %n", getVersionNumber());
errorPrintf("%n"); errorPrintf("%n");
errorPrintf("This means that there is something wrong with the BAM/CRAM file(s) you provided.%n"); errorPrintf("This means that there is something wrong with the input file(s) you provided.%n");
errorPrintf("The error message below tells you what is the problem.%n"); errorPrintf("The error message below tells you what is the problem.%n");
errorPrintf("%n"); errorPrintf("%n");
printDocumentationReference(); printDocumentationReference();