From 7bb9704592cd044dbe8559b50a1ffeeac4aac3f1 Mon Sep 17 00:00:00 2001 From: rpoplin Date: Thu, 7 Oct 2010 19:55:57 +0000 Subject: [PATCH] Update the BeagleOutputToVCF integration test because of removing the source header line. Source headers are provided by the engine for all VCF files now. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4453 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/walkers/beagle/BeagleIntegrationTest.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java index 563da06d6..1ea180ed3 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java @@ -41,7 +41,7 @@ public class BeagleIntegrationTest extends WalkerTest { "-B:beagleR2,BEAGLE " + beagleValidationDataLocation + "inttestbgl.r2 " + "-B:beagleProbs,BEAGLE " + beagleValidationDataLocation + "inttestbgl.gprobs " + "-B:beaglePhased,BEAGLE " + beagleValidationDataLocation + "inttestbgl.phased " + - "-o %s -NO_HEADER", 1, Arrays.asList("caf2a19009e50931157bb4a7b1763282")); + "-o %s -NO_HEADER", 1, Arrays.asList("e04d9768cdb94d1f0e2e35a7f1bc49ab")); executeTest("test BeagleOutputToVCF", spec); }