diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java index 8e625e9b8..5a885d88b 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java @@ -66,7 +66,7 @@ public class PrintReadsWalker extends ReadWalker { // check the read group if ( readGroup != null ) { SAMReadGroupRecord myReadGroup = read.getReadGroup(); - if ( myReadGroup == null || !readGroup.equals(myReadGroup) ) + if ( myReadGroup == null || !readGroup.equals(myReadGroup.getReadGroupId()) ) return false; }