From 7b7d3341f00fe9ed47314a58c232b91ba1f56309 Mon Sep 17 00:00:00 2001 From: asivache Date: Mon, 14 Jun 2010 14:02:23 +0000 Subject: [PATCH] trivial refactoring: isFile renamed to isIntervalFile and made public git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3541 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/utils/interval/IntervalUtils.java | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/java/src/org/broadinstitute/sting/utils/interval/IntervalUtils.java b/java/src/org/broadinstitute/sting/utils/interval/IntervalUtils.java index 9924266fd..73139d8ea 100644 --- a/java/src/org/broadinstitute/sting/utils/interval/IntervalUtils.java +++ b/java/src/org/broadinstitute/sting/utils/interval/IntervalUtils.java @@ -47,7 +47,7 @@ public class IntervalUtils { for (String fileOrInterval : argument.split(";")) { // if it's a file, add items to raw interval list - if (isFile(fileOrInterval)) + if (isIntervalFile(fileOrInterval)) rawIntervals.addAll(GenomeLocParser.intervalFileToList(fileOrInterval)); // otherwise treat as an interval -> parse and add to raw interval list @@ -85,7 +85,7 @@ public class IntervalUtils { * @param str token to identify as a filename. * @return true if the token looks like a filename, or false otherwise. */ - private static boolean isFile(String str) { + public static boolean isIntervalFile(String str) { // should we define list of file extensions as a public array somewhere? // is regex or endsiwth better? if (str.toUpperCase().endsWith(".BED") || str.toUpperCase().endsWith(".LIST") || @@ -99,5 +99,8 @@ public class IntervalUtils { "Please rename your file with the appropriate extension."); else return false; - } + } + } + +