From 7b59f63f12feb35bb6e6de46fc4b92c28d1ebf97 Mon Sep 17 00:00:00 2001
From: asivache <asivache@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 13 May 2009 20:46:36 +0000
Subject: [PATCH] and don't forget to close sam writer after we are done...

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@692 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/playground/indels/IndelInspectorMain.java              | 1 +
 1 file changed, 1 insertion(+)

diff --git a/java/src/org/broadinstitute/sting/playground/indels/IndelInspectorMain.java b/java/src/org/broadinstitute/sting/playground/indels/IndelInspectorMain.java
index 5d7c799c3..e3a175e4d 100755
--- a/java/src/org/broadinstitute/sting/playground/indels/IndelInspectorMain.java
+++ b/java/src/org/broadinstitute/sting/playground/indels/IndelInspectorMain.java
@@ -213,6 +213,7 @@ public class IndelInspectorMain extends CommandLineProgram {
         col.printLengthHistograms();
         samReader.close();
         ptWriter.close();
+        if ( ptFailedWriter != null ) ptFailedWriter.close();
         return 0;
     }