zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Better eagerDecode default. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2938 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2010-03-05 16:42:23 +00:00
parent 33cefddf55
commit 7a7e85188c
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/BlockDrivenSAMDataSource.java
View File

@ -363,7 +363,7 @@ public class BlockDrivenSAMDataSource extends SAMDataSource {
*/ */
public SAMReaders(Reads sourceInfo) { public SAMReaders(Reads sourceInfo) {
for(File readsFile: sourceInfo.getReadsFiles()) { for(File readsFile: sourceInfo.getReadsFiles()) {
SAMFileReader2 reader = new SAMFileReader2(readsFile); SAMFileReader2 reader = new SAMFileReader2(readsFile,true);
reader.setValidationStringency(sourceInfo.getValidationStringency()); reader.setValidationStringency(sourceInfo.getValidationStringency());
readers.put(new SAMReaderID(readsFile),reader); readers.put(new SAMReaderID(readsFile),reader);
} }