From 7a7e85188ca0c1b46b94a9c23e998e4af19dc4ce Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 5 Mar 2010 16:42:23 +0000
Subject: [PATCH] Better eagerDecode default.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2938 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../datasources/simpleDataSources/BlockDrivenSAMDataSource.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/BlockDrivenSAMDataSource.java b/java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/BlockDrivenSAMDataSource.java
index 13c4d91a9..ac8281634 100644
--- a/java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/BlockDrivenSAMDataSource.java
+++ b/java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/BlockDrivenSAMDataSource.java
@@ -363,7 +363,7 @@ public class BlockDrivenSAMDataSource extends SAMDataSource {
          */
         public SAMReaders(Reads sourceInfo) {
             for(File readsFile: sourceInfo.getReadsFiles()) {
-                SAMFileReader2 reader = new SAMFileReader2(readsFile);
+                SAMFileReader2 reader = new SAMFileReader2(readsFile,true);
                 reader.setValidationStringency(sourceInfo.getValidationStringency());
                 readers.put(new SAMReaderID(readsFile),reader);
             }