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actually modify the vcf when a sample has been down-sampled 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4150 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2010-08-27 19:03:21 +00:00
parent c6441b585a
commit 7a5f297083
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java
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@ -202,7 +202,7 @@ public class UnifiedGenotyperEngine {
if ( rawContext.hasPileupBeenDownsampled() ) { if ( rawContext.hasPileupBeenDownsampled() ) {
Map<String, Object> attrs = new HashMap<String, Object>(call.vc.getAttributes()); Map<String, Object> attrs = new HashMap<String, Object>(call.vc.getAttributes());
attrs.put(VCFConstants.DOWNSAMPLED_KEY, true); attrs.put(VCFConstants.DOWNSAMPLED_KEY, true);
VariantContextUtils.modifyAttributes(call.vc, attrs); call.vc = VariantContextUtils.modifyAttributes(call.vc, attrs);
} }
} }
return call; return call;