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Made sequence index compatible with Aaron's junit changes. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@407 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2009-04-14 17:53:20 +00:00
parent 88ebf1a05b
commit 7a4a5a17c0
1 changed files with 4 additions and 3 deletions
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7
java/test/org/broadinstitute/sting/utils/FastaSequenceIndexTest.java
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@ -5,6 +5,7 @@ import org.junit.Before;
import org.junit.Test; import org.junit.Test;
import org.junit.Assert; import org.junit.Assert;
import org.apache.log4j.BasicConfigurator; import org.apache.log4j.BasicConfigurator;
import org.broadinstitute.sting.BaseTest;
import java.io.File; import java.io.File;
import java.io.FileNotFoundException; import java.io.FileNotFoundException;
@ -18,13 +19,13 @@ import edu.mit.broad.picard.PicardException;
* Time: 10:34:15 AM * Time: 10:34:15 AM
* To change this template use File | Settings | File Templates. * To change this template use File | Settings | File Templates.
*/ */
public class FastaSequenceIndexTest { public class FastaSequenceIndexTest extends BaseTest {
private final String sequenceIndexName = "/Volumes/ifs/seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta.fai"; private static String sequenceIndexName = null;
private FastaSequenceIndex sequenceIndex = null; private FastaSequenceIndex sequenceIndex = null;
@BeforeClass @BeforeClass
public static void initialize() { public static void initialize() {
BasicConfigurator.configure(); sequenceIndexName = seqLocation + "/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta.fai";
} }
@Before @Before