From 7a4a5a17c0c025e70666b5847b8df7cc90cbe188 Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 14 Apr 2009 17:53:20 +0000
Subject: [PATCH] Made sequence index compatible with Aaron's junit changes.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@407 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../broadinstitute/sting/utils/FastaSequenceIndexTest.java | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/java/test/org/broadinstitute/sting/utils/FastaSequenceIndexTest.java b/java/test/org/broadinstitute/sting/utils/FastaSequenceIndexTest.java
index 90375641b..423d2d3dc 100755
--- a/java/test/org/broadinstitute/sting/utils/FastaSequenceIndexTest.java
+++ b/java/test/org/broadinstitute/sting/utils/FastaSequenceIndexTest.java
@@ -5,6 +5,7 @@ import org.junit.Before;
 import org.junit.Test;
 import org.junit.Assert;
 import org.apache.log4j.BasicConfigurator;
+import org.broadinstitute.sting.BaseTest;
 
 import java.io.File;
 import java.io.FileNotFoundException;
@@ -18,13 +19,13 @@ import edu.mit.broad.picard.PicardException;
  * Time: 10:34:15 AM
  * To change this template use File | Settings | File Templates.
  */
-public class FastaSequenceIndexTest {
-    private final String sequenceIndexName = "/Volumes/ifs/seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta.fai";
+public class FastaSequenceIndexTest extends BaseTest {
+    private static String sequenceIndexName = null;
     private FastaSequenceIndex sequenceIndex = null;
 
     @BeforeClass
     public static void initialize() {
-        BasicConfigurator.configure();
+        sequenceIndexName = seqLocation + "/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta.fai";
     }
 
     @Before