diff --git a/java/test/org/broadinstitute/sting/utils/FastaSequenceIndexTest.java b/java/test/org/broadinstitute/sting/utils/FastaSequenceIndexTest.java index 90375641b..423d2d3dc 100755 --- a/java/test/org/broadinstitute/sting/utils/FastaSequenceIndexTest.java +++ b/java/test/org/broadinstitute/sting/utils/FastaSequenceIndexTest.java @@ -5,6 +5,7 @@ import org.junit.Before; import org.junit.Test; import org.junit.Assert; import org.apache.log4j.BasicConfigurator; +import org.broadinstitute.sting.BaseTest; import java.io.File; import java.io.FileNotFoundException; @@ -18,13 +19,13 @@ import edu.mit.broad.picard.PicardException; * Time: 10:34:15 AM * To change this template use File | Settings | File Templates. */ -public class FastaSequenceIndexTest { - private final String sequenceIndexName = "/Volumes/ifs/seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta.fai"; +public class FastaSequenceIndexTest extends BaseTest { + private static String sequenceIndexName = null; private FastaSequenceIndex sequenceIndex = null; @BeforeClass public static void initialize() { - BasicConfigurator.configure(); + sequenceIndexName = seqLocation + "/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta.fai"; } @Before