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Finally, the logic is right 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4674 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2010-11-15 14:02:09 +00:00
parent 8d66637fc2
commit 7a3a464959
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java
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@ -117,7 +117,7 @@ public class VariantsToTable extends RodWalker<Integer, Integer> {
if ( ++nRecords < MAX_RECORDS || MAX_RECORDS == -1 ) {
Collection<VariantContext> vcs = tracker.getAllVariantContexts(ref, context.getLocation());
for ( VariantContext vc : vcs) {
if ( ! ignoreMultiAllelic || vc.isBiallelic() || ( showFiltered || vc.isNotFiltered() ) ) {
if ( (! ignoreMultiAllelic || vc.isBiallelic()) && ( showFiltered || vc.isNotFiltered() ) ) {
List<String> vals = extractFields(vc, fieldsToTake);
out.println(Utils.join("\t", vals));