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Fixed bad character in documentation

This commit is contained in:
Mark DePristo 2011-08-17 11:56:51 -04:00
parent c365da3c51
commit 79dcfca25f
1 changed files with 1 additions and 1 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java
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@ -69,7 +69,7 @@ import java.util.*;
* <p>
* The local realignment tool is designed to consume one or more BAM files and to locally realign reads such that the number of mismatching bases
* is minimized across all the reads. In general, a large percent of regions requiring local realignment are due to the presence of an insertion
* or deletion (indels) in the individualÕs genome with respect to the reference genome. Such alignment artifacts result in many bases mismatching
* or deletion (indels) in the individual's genome with respect to the reference genome. Such alignment artifacts result in many bases mismatching
* the reference near the misalignment, which are easily mistaken as SNPs. Moreover, since read mapping algorithms operate on each read independently,
* it is impossible to place reads on the reference genome such at mismatches are minimized across all reads. Consequently, even when some reads are
* correctly mapped with indels, reads covering the indel near just the start or end of the read are often incorrectly mapped with respect the true indel,