From 79b997f43d65b7e9f9cabe6393cb04780f668287 Mon Sep 17 00:00:00 2001
From: chartl <chartl@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 18 Dec 2009 15:45:51 +0000
Subject: [PATCH] Minor fix to getValue (thanks Ryan!)

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2404 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../gatk/walkers/recalibration/PairedReadOrderCovariate.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/PairedReadOrderCovariate.java b/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/PairedReadOrderCovariate.java
index 798f91399..9d04be16e 100644
--- a/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/PairedReadOrderCovariate.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/PairedReadOrderCovariate.java
@@ -18,7 +18,7 @@ public class PairedReadOrderCovariate implements ExperimentalCovariate{
     }
 
     public final Comparable getValue( final String str ) {
-        return str.hashCode();
+        return str;
     }
 
     // Used to estimate the amount space required for the full data HashMap