From 79993be46cd30ec510a5c7e8186b9ac9c51ef2ee Mon Sep 17 00:00:00 2001
From: kcibul <kcibul@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 15 Oct 2009 13:47:00 +0000
Subject: [PATCH] changed blank gene name to UNKNOWN

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1851 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../playground/gatk/walkers/HybSelPerformanceWalker.java    | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java
index ea9fff83a..b3a9b67e8 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java
@@ -206,10 +206,10 @@ public class HybSelPerformanceWalker extends LocusWalker<Integer, HybSelPerforma
     }
 
     private String getGeneName(GenomeLoc target) {
-        if (refseqIterator == null) { return ""; }
+        if (refseqIterator == null) { return "UNKNOWN"; }
 
         RODRecordList<rodRefSeq> annotationList = refseqIterator.seekForward(target);
-        if (annotationList == null) { return ""; }
+        if (annotationList == null) { return "UNKNOWN"; }
         
         for(rodRefSeq rec : annotationList) {
             if ( rec.overlapsExonP(target) ) {
@@ -217,7 +217,7 @@ public class HybSelPerformanceWalker extends LocusWalker<Integer, HybSelPerforma
             }
         }
 
-        return "";
+        return "UNKNOWN";
 
     }