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Enable the Genotype Phasing Evaluator. Because it didn't have the same argument structure as the base class, update2 of VariantEvaluator was being called, rather than update2 of the actual module.

This commit is contained in:
Christopher Hartl 2012-01-23 10:50:16 -05:00
parent 31d2f04368
commit 798596257b
1 changed files with 4 additions and 0 deletions
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4
public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/GenotypePhasingEvaluator.java
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@ -80,6 +80,10 @@ public class GenotypePhasingEvaluator extends VariantEvaluator {
return getName() + ": <table>";
}
public String update2(VariantContext eval, VariantContext comp, RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context) {
return update2(eval,comp,tracker,ref,context,null);
}
public String update2(VariantContext eval, VariantContext comp, RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context, NewEvaluationContext group) {
//public String update2(VariantContext eval, VariantContext comp, RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context, VariantEvalWalker.EvaluationContext group) {
Reasons interesting = new Reasons();