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interim update 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3173 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2010-04-15 14:25:02 +00:00
parent b54031fc86
commit 7973806716
1 changed files with 4 additions and 3 deletions
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7
python/Verify1KGArchiveBAMs.py
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@ -200,6 +200,7 @@ def compareAlignmentIndices(remoteAlignmentIndex, alignmentIndex):
print ' md5s: local=%s remote=%s' % (raImd5, laImd5) print ' md5s: local=%s remote=%s' % (raImd5, laImd5)
if raImd5 <> laImd5: if raImd5 <> laImd5:
print ' [FAIL] -- alignment indices do not have the same hash!' print ' [FAIL] -- alignment indices do not have the same hash!'
sys.exit(1)
else: else:
print ' [PASS] -- alignment indices are the same' print ' [PASS] -- alignment indices are the same'
@ -250,6 +251,9 @@ if __name__ == "__main__":
FTPSERVER = FTP(ftpParsed[1]) FTPSERVER = FTP(ftpParsed[1])
FTPSERVER.login() FTPSERVER.login()
displayChangeLog(OPTIONS.remoteChangeLog)
compareAlignmentIndices(OPTIONS.remoteAlignmentIndex, OPTIONS.alignmentIndex)
results = dict() results = dict()
for file in itertools.chain(readAlignmentIndex(OPTIONS.alignmentIndex), filesInLocalPath(root, OPTIONS.scanLocal )): for file in itertools.chain(readAlignmentIndex(OPTIONS.alignmentIndex), filesInLocalPath(root, OPTIONS.scanLocal )):
#print line #print line
@ -259,9 +263,6 @@ if __name__ == "__main__":
results[file] = compared results[file] = compared
#localIndex #localIndex
compareAlignmentIndices(OPTIONS.remoteAlignmentIndex, OPTIONS.alignmentIndex)
displayChangeLog(OPTIONS.remoteChangeLog)
printHeaderSep() printHeaderSep()
print 'SUMMARY: Total files examined', len(results) print 'SUMMARY: Total files examined', len(results)
for status in ['in-sync', 'size-mismatch', 'unknown-local-file', 'local-file-missing', 'orphaned-file']: for status in ['in-sync', 'size-mismatch', 'unknown-local-file', 'local-file-missing', 'orphaned-file']: