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Changed some ShortNames so they made more sense. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1604 348d0f76-0448-11de-a6fe-93d51630548a
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chartl 2009-09-13 01:32:12 +00:00
parent b353bd6f81
commit 794bd26b20
1 changed files with 2 additions and 2 deletions
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4
java/src/org/broadinstitute/sting/playground/gatk/walkers/poolseq/PowerAndCoverageWalker.java
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@ -45,10 +45,10 @@ public class PowerAndCoverageWalker extends LocusWalker<SQuad<Integer>, SQuad<Lo
@Argument(fullName="aboveQScoreOutputOnly", doc="Output only the information for reads that exceed the q-score threshold", required=false)
public boolean aboveQScoreOutputOnly = false;
@Argument(fullName="outputRawStatistics", shortName="rp", doc="Walker outputs the median quality score and power for the un-thresholded reads as well as those that are thresholded", required=false)
@Argument(fullName="outputRawStatistics", shortName="rs", doc="Walker outputs the median quality score and power for the un-thresholded reads as well as those that are thresholded", required=false)
public boolean outputRawStatistics = false;
@Argument(fullName="poolSize", shortName="pf", doc="Number of individuals in the pool", required = true)
@Argument(fullName="poolSize", shortName="ps", doc="Number of individuals in the pool", required = true)
public int numIndividuals = 0;
protected PrintStream outputWriter = null;