From 7916ab0ed5a473a579ff6dafb58a5df5fc52b806 Mon Sep 17 00:00:00 2001
From: aaron <aaron@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 12 Jan 2011 17:38:22 +0000
Subject: [PATCH] remove the index each run

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4976 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../simpleDataSources/ReferenceOrderedDataPoolUnitTest.java  | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/java/test/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataPoolUnitTest.java b/java/test/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataPoolUnitTest.java
index f50734884..392df2c8a 100755
--- a/java/test/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataPoolUnitTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataPoolUnitTest.java
@@ -70,6 +70,11 @@ public class ReferenceOrderedDataPoolUnitTest extends BaseTest {
     @BeforeMethod
     public void setUp() {
         String fileName = testDir + "TabularDataTest.dat";
+
+        // check to see if we have an index, if so, delete it
+        File indexFileName = new File(testDir + "TabularDataTest.dat.idx");
+        if (indexFileName.exists()) indexFileName.delete();  
+
         triplet = new RMDTriplet("tableTest","Table",fileName,RMDStorageType.FILE);
         builder = new RMDTrackBuilder(Collections.singletonList(triplet),seq.getSequenceDictionary(),genomeLocParser,null);
     }