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New sharding system is going live again for on-the-fly merging. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3076 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2010-03-25 18:39:04 +00:00
parent 46c14ec63f
commit 78af6d5a40
1 changed files with 0 additions and 4 deletions
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4
java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java
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@ -769,10 +769,6 @@ public class GenomeAnalysisEngine {
if (reads.getReadsFiles().size() == 0) if (reads.getReadsFiles().size() == 0)
return null; return null;
// Force dynamic merging to use original sharding method until memory usage is under control.
if (reads.getReadsFiles().size() > 1)
argCollection.disableExperimentalSharding = true;
SAMDataSource dataSource = null; SAMDataSource dataSource = null;
if(!argCollection.disableExperimentalSharding) if(!argCollection.disableExperimentalSharding)
dataSource = new BlockDrivenSAMDataSource(reads); dataSource = new BlockDrivenSAMDataSource(reads);