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Spit out the error in the warning message so that Sendu can tell me what his problem is 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3942 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2010-08-04 20:40:28 +00:00
parent 5815348ebc
commit 7858ffec32
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/GenerateVariantClustersWalker.java
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@ -244,7 +244,7 @@ public class GenerateVariantClustersWalker extends RodWalker<ExpandingArrayList<
try {
Runtime.getRuntime().exec( rScriptCommandLine );
} catch ( IOException e ) {
Utils.warnUser("Unable to execute the RScript command. While not critical to the calculations themselves, the script outputs a report that is extremely useful for confirming that the clustering proceded as expected. We highly recommend trying to rerun the script manually if possible.");
Utils.warnUser("Unable to execute the RScript command because of [" + e.getMessage() + "]. While not critical to the calculations themselves, the script outputs a report that is extremely useful for confirming that the clustering proceded as expected. We highly recommend trying to rerun the script manually if possible.");
}
}
}