zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Step towards tribble precompiled jar, support in build.xml for source with fallback to the checked in jar. 

Current tribble-129M.jar in SVN does not work with current version of GATK code.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5897 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kshakir 2011-05-27 21:04:27 +00:00
parent a50c40ed05
commit 77cae39c8e
1 changed files with 32 additions and 9 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

41
build.xml
View File

@ -744,27 +744,52 @@
<!-- ***************************************************************************** -->
<!-- *********** Tribble ********* -->
<!-- ***************************************************************************** -->
<target name="tribble.init" description="checks if tribble is available to build from source">
<condition property="tribble.compile.exists">
<available file="${tribble.dir}/build.xml"/>
</condition>
</target>
<!-- compile the library -->
<target name="tribble.compile" description="compiles the tribble library">
<target name="tribble.compile" description="compiles the tribble library" depends="tribble.init" if="tribble.compile.exists">
<echo message="Building the Tribble Library..."/>
<ant antfile="build.xml" target="all" dir="${tribble.dir}" inheritAll="false"/>
</target>
<!-- build the jar -->
<target name="tribble" description="Builds the tribble jar" depends="tribble.compile">
<!-- copy the compiled library -->
<target name="tribble.compile.copy" description="Copies the compiled tribble library" depends="tribble.compile" if="tribble.compile.exists">
<copy todir="lib">
<fileset dir="${tribble.dir}/dist" includes="*.jar"/>
</copy>
<fileset dir="${tribble.dir}/dist" includes="*.jar"/>
</copy>
</target>
<!-- copy the precompiled library -->
<target name="tribble.library.copy" description="Copies the precompiled tribble library" depends="tribble.init" unless="tribble.compile.exists">
<echo message="Copying the Tribble Library..."/>
<copy todir="lib">
<fileset dir="settings/repository/org.broad" includes="tribble*.jar"/>
</copy>
</target>
<target name="tribble" description="Copies the tribble jar" depends="tribble.compile.copy,tribble.library.copy"/>
<target name="tribble.test.init" description="runs the tribble tests" depends="tribble.init">
<condition property="tribble.test.run">
<and>
<isset property="tribble.compile.exists"/>
<not><isset property="single"/></not>
</and>
</condition>
</target>
<!-- test tribble using the unit tests set in tribble -->
<target name="tribble.test" description="runs the tribble tests" depends="tribble.compile" unless="single">
<target name="tribble.test" description="runs the tribble tests" depends="tribble.test.init,tribble.compile" if="tribble.test.run">
<echo message="Testing the Tribble Library..."/>
<ant antfile="build.xml" target="test" dir="${tribble.dir}" inheritAll="false"/>
</target>
<!-- clean tribble -->
<target name="tribble.clean" description="cleans the tribble library">
<target name="tribble.clean" description="cleans the tribble library" depends="tribble.init" if="tribble.compile.exists">
<echo message="Cleaning the Tribble Library..."/>
<ant antfile="build.xml" target="clean" dir="${tribble.dir}" inheritAll="false"/>
</target>
@ -880,8 +905,6 @@
<delete dir="staging"/>
<delete dir="${dist.dir}"/>
<delete dir="pipelinetests"/>
<!-- When we clean, make sure to clean out tribble as well -->
<ant antfile="tribble/build.xml" target="clean"/>
</target>
<!-- Build gsalib R module -->