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Changed a variable name 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3163 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
weisburd 2010-04-14 14:38:18 +00:00
parent 7b8056099c
commit 77a6608784
1 changed files with 5 additions and 5 deletions
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10
java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotatorEngine.java
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@ -38,7 +38,7 @@ public class VariantAnnotatorEngine {
private Map<String, Set<String>> requestedColumnsMap; private Map<String, Set<String>> requestedColumnsMap;
// command-line option used for GenomicAnnotation. // command-line option used for GenomicAnnotation.
private boolean explode; private boolean oneToMany;
// use this constructor if you want all possible annotations // use this constructor if you want all possible annotations
@ -194,7 +194,7 @@ public class VariantAnnotatorEngine {
final String inputFileBindingName = annotationsFromInputFile.getKey(); final String inputFileBindingName = annotationsFromInputFile.getKey();
final List<Map<String, String>> matchingRecords = (List<Map<String, String>>) annotationsFromInputFile.getValue(); final List<Map<String, String>> matchingRecords = (List<Map<String, String>>) annotationsFromInputFile.getValue();
if( matchingRecords.size() > 1 && explode) if( matchingRecords.size() > 1 && oneToMany)
{ {
//More than one record matched in this file. After this, infoAnnotationOutputsList.size() will be infoAnnotationOutputsList.size()*matchingRecords.size(). //More than one record matched in this file. After this, infoAnnotationOutputsList.size() will be infoAnnotationOutputsList.size()*matchingRecords.size().
infoAnnotationOutputsList = explodeInfoAnnotationOutputsList( infoAnnotationOutputsList, matchingRecords, inputFileBindingName); infoAnnotationOutputsList = explodeInfoAnnotationOutputsList( infoAnnotationOutputsList, matchingRecords, inputFileBindingName);
@ -375,10 +375,10 @@ public class VariantAnnotatorEngine {
* *
* See class-level comments for more details. * See class-level comments for more details.
* *
* @param explode * @param oneToMany
*/ */
public void setExplode(boolean explode) { public void setOneToMany(boolean oneToMany) {
this.explode = explode; this.oneToMany = oneToMany;
} }
/** /**