From 7755476d3695dcb3e4a12237fa85b40468998f82 Mon Sep 17 00:00:00 2001 From: andrewk Date: Wed, 3 Jun 2009 10:05:28 +0000 Subject: [PATCH] Updated coverter to reflect change in contig ordering in Geli files git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@888 348d0f76-0448-11de-a6fe-93d51630548a --- python/Geli2GFF.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/python/Geli2GFF.py b/python/Geli2GFF.py index 928434be0..e9911e740 100755 --- a/python/Geli2GFF.py +++ b/python/Geli2GFF.py @@ -29,8 +29,9 @@ if __name__ == "__main__": for line in pipe: if line[0] not in ('@', '#'): fields = line.split("\t") + #print fields try: - contig = Index2AffyChr[int(fields[0])] + contig = fields[0] #Index2AffyChr[int(fields[0])] except KeyError, ValueError: print "skipping "+fields[0] continue # Skip entries not in chr 0 through 24