Updated coverter to reflect change in contig ordering in Geli files

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@888 348d0f76-0448-11de-a6fe-93d51630548a
2009-06-03 10:05:28 +00:00 · 2009-06-03 10:05:28 +00:00 · 7755476d36
parent 40af4f085c
commit 7755476d36
1 changed files with 2 additions and 1 deletions
--- a/python/Geli2GFF.py
+++ b/python/Geli2GFF.py
@ -29,8 +29,9 @@ if __name__ == "__main__":
    for line in pipe:
        if line[0] not in ('@', '#'):
            fields = line.split("\t")
+            #print fields
            try:
-                contig = Index2AffyChr[int(fields[0])]
+                contig = fields[0] #Index2AffyChr[int(fields[0])]
            except KeyError, ValueError:
                print "skipping "+fields[0]
                continue # Skip entries not in chr 0 through 24