diff --git a/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala b/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala index d7d44bd96..61a4bf120 100644 --- a/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala +++ b/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala @@ -23,11 +23,11 @@ class FullCallingPipelineTest extends BaseTest { val dataset = newK1gDataset("Barcoded_1000G_WEx_chr20") dataset.pipeline.getProject.setIntervalList(new File(BaseTest.GATKDataLocation + "whole_exome_agilent_1.1_refseq_plus_3_boosters.Homo_sapiens_assembly19.targets.chr20.interval_list")) - dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.all.counter.nCalledLoci", 1352) - dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.known.counter.nCalledLoci", 1128) + dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.all.counter.nCalledLoci", 1348) + dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.known.counter.nCalledLoci", 1124) dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.novel.counter.nCalledLoci", 224) - dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.all.titv.tiTvRatio", 3.6621) - dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.known.titv.tiTvRatio", 3.7395) + dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.all.titv.tiTvRatio", 3.6644) + dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.known.titv.tiTvRatio", 3.7426) dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.novel.titv.tiTvRatio", 3.3077) dataset.jobQueue = "hour" @@ -39,12 +39,12 @@ class FullCallingPipelineTest extends BaseTest { val dataset = newK1gDataset("Barcoded_1000G_WEx") dataset.pipeline.getProject.setIntervalList(new File(BaseTest.GATKDataLocation + "whole_exome_agilent_1.1_refseq_plus_3_boosters.Homo_sapiens_assembly19.targets.interval_list")) - dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.all.counter.nCalledLoci", 50936) - dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.known.counter.nCalledLoci", 40956) - dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.novel.counter.nCalledLoci", 9980) - dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.all.titv.tiTvRatio", 3.2724) - dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.known.titv.tiTvRatio", 3.3349) - dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.novel.titv.tiTvRatio", 3.0340) + dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.all.counter.nCalledLoci", 50755) + dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.known.counter.nCalledLoci", 40894) + dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.novel.counter.nCalledLoci", 9861) + dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.all.titv.tiTvRatio", 3.2820) + dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.known.titv.tiTvRatio", 3.3384) + dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.novel.titv.tiTvRatio", 3.0630) dataset.jobQueue = "gsa"