zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Added getParents() -> returns an arrayList containing the sample's parent(s) if available

This commit is contained in:
Laurent Francioli 2011-10-20 12:47:27 +02:00
parent aad99563be
commit 76dd816e70
1 changed files with 12 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

12
public/java/src/org/broadinstitute/sting/gatk/samples/Sample.java
View File

@ -3,6 +3,7 @@ package org.broadinstitute.sting.gatk.samples;
import org.broadinstitute.sting.utils.exceptions.UserException; import org.broadinstitute.sting.utils.exceptions.UserException;
import java.util.ArrayList;
import java.util.HashMap; import java.util.HashMap;
import java.util.Map; import java.util.Map;
@ -110,6 +111,17 @@ public class Sample implements Comparable<Sample> { // implements java.io.Serial
return infoDB.getSample(paternalID); return infoDB.getSample(paternalID);
} }
public ArrayList<Sample> getParents(){
ArrayList<Sample> parents = new ArrayList<Sample>(2);
Sample parent = getMother();
if(parent != null)
parents.add(parent);
parent = getFather();
if(parent != null)
parents.add(parent);
return parents;
}
/** /**
* Get gender of the sample * Get gender of the sample
* @return property of key "gender" - must be of type Gender * @return property of key "gender" - must be of type Gender