From 76d357be408d4f58348aafc32b6df63c59d79825 Mon Sep 17 00:00:00 2001
From: Eric Banks <ebanks@broadinstitute.org>
Date: Sat, 12 Nov 2011 23:20:05 -0500
Subject: [PATCH] Updating docs example to use -L since that's best practice

---
 .../sting/gatk/walkers/annotator/VariantAnnotator.java           | 1 +
 1 file changed, 1 insertion(+)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotator.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotator.java
index 087218cfb..58762c054 100755
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotator.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotator.java
@@ -70,6 +70,7 @@ import java.util.*;
  *   -o output.vcf \
  *   -A DepthOfCoverage
  *   --variant input.vcf \
+ *   -L input.vcf
  *   --dbsnp dbsnp.vcf
  * </pre>
  *