zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

oops, need to update class names too 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3019 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2010-03-17 14:01:31 +00:00
parent 85a030069d
commit 76d14d17dc
2 changed files with 2 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
java/src/org/broadinstitute/sting/gatk/filters/BadCigarFilter.java
View File

@ -34,7 +34,7 @@ import net.sf.samtools.*;
* @version 0.1 * @version 0.1
*/ */
public class BadCigarReadFilter implements SamRecordFilter { public class BadCigarFilter implements SamRecordFilter {
public boolean filterOut(final SAMRecord rec) { public boolean filterOut(final SAMRecord rec) {
Cigar c = rec.getCigar(); Cigar c = rec.getCigar();

2
java/src/org/broadinstitute/sting/gatk/filters/BadMateFilter.java
View File

@ -34,7 +34,7 @@ import net.sf.samtools.SAMRecord;
* @version 0.1 * @version 0.1
*/ */
public class BadMateReadFilter implements SamRecordFilter { public class BadMateFilter implements SamRecordFilter {
public boolean filterOut(final SAMRecord rec) { public boolean filterOut(final SAMRecord rec) {
return (rec.getReadPairedFlag() && !rec.getMateUnmappedFlag() && rec.getMateReferenceIndex() != rec.getReferenceIndex()); return (rec.getReadPairedFlag() && !rec.getMateUnmappedFlag() && rec.getMateReferenceIndex() != rec.getReferenceIndex());