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Forgot to update the unit test

This commit is contained in:
Eric Banks 2011-12-18 01:13:49 -05:00
parent 07f9d14d9f
commit 76bd13a1ed
1 changed files with 6 additions and 1 deletions
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7
public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/ExactAFCalculationModelUnitTest.java
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@ -97,7 +97,12 @@ public class ExactAFCalculationModelUnitTest extends BaseTest {
for ( int allele = 0; allele < cfg.numAltAlleles; allele++, nameIndex+=2 ) { for ( int allele = 0; allele < cfg.numAltAlleles; allele++, nameIndex+=2 ) {
int expectedAlleleCount = Integer.valueOf(cfg.name.substring(nameIndex, nameIndex+1)); int expectedAlleleCount = Integer.valueOf(cfg.name.substring(nameIndex, nameIndex+1));
int calculatedAlleleCount = MathUtils.maxElementIndex(result.log10AlleleFrequencyPosteriors[allele]); int calculatedAlleleCount = MathUtils.maxElementIndex(result.log10AlleleFrequencyPosteriors[allele]);
Assert.assertEquals(calculatedAlleleCount, expectedAlleleCount);
if ( result.log10AlleleFrequencyPosteriors[0][0] == AlleleFrequencyCalculationModel.VALUE_NOT_CALCULATED ) {
Assert.assertTrue(calculatedAlleleCount == expectedAlleleCount || result.log10AlleleFrequencyPosteriors[0][calculatedAlleleCount] < result.log10PosteriorOfAFzero);
} else {
Assert.assertEquals(calculatedAlleleCount, expectedAlleleCount);
}
} }
} }
} }