diff --git a/public/gatk-tools-public/src/main/resources/org/broadinstitute/gatk/tools/walkers/variantrecalibration/plot_Tranches.R b/public/gatk-tools-public/src/main/resources/org/broadinstitute/gatk/tools/walkers/variantrecalibration/plot_Tranches.R index d96add768..4fe59083c 100755 --- a/public/gatk-tools-public/src/main/resources/org/broadinstitute/gatk/tools/walkers/variantrecalibration/plot_Tranches.R +++ b/public/gatk-tools-public/src/main/resources/org/broadinstitute/gatk/tools/walkers/variantrecalibration/plot_Tranches.R @@ -41,7 +41,7 @@ leftShift <- function(x, leftValue = 0) { # Tranches plot # ----------------------------------------------------------------------------------------------- data2 = read.table(tranchesFile,sep=",",head=T) -data2 = data2[order(data2$novelTiTv, decreasing=F),] +data2 = data2[order(data2$targetTruthSensitivity, decreasing=T),] #data2 = data2[order(data2$FDRtranche, decreasing=T),] cols = c("cornflowerblue", "cornflowerblue", "darkorange", "darkorange") density=c(20, -1, -1, 20)