From 76485217184bc6f6891f7a3a76380b38a3fceb6f Mon Sep 17 00:00:00 2001
From: Eric Banks <ebanks@broadinstitute.org>
Date: Wed, 14 Dec 2011 11:26:43 -0500
Subject: [PATCH] Add check for mixed genotype so that we don't exception out
 for a valid record

---
 .../gatk/walkers/varianteval/evaluators/CountVariants.java      | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/CountVariants.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/CountVariants.java
index c740eb78c..e5e8dfaf5 100755
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/CountVariants.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/CountVariants.java
@@ -182,6 +182,8 @@ public class CountVariants extends VariantEvaluator implements StandardEval {
                         nHomDerived++;
                     }
 
+                    break;
+                case MIXED:
                     break;
                 default:
                     throw new ReviewedStingException("BUG: Unexpected genotype type: " + g);