From 7605ee500ca7438e2807c983ac4da452bde72cc9 Mon Sep 17 00:00:00 2001
From: chartl <chartl@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 2 Oct 2009 20:04:56 +0000
Subject: [PATCH] Idiocy! All tests were being disabled because I forgot the
 instanceof

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1760 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../playground/gatk/walkers/varianteval/VariantEvalWalker.java  | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantEvalWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantEvalWalker.java
index 5be4d8157..7fd685696 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantEvalWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantEvalWalker.java
@@ -131,7 +131,7 @@ public class VariantEvalWalker extends RefWalker<Integer, Integer> {
             VariantAnalysis analysis = iter.next();
             boolean disableForGenotyping = evalContainsGenotypes && ! (analysis instanceof GenotypeAnalysis);
             boolean disableForPopulation = ! evalContainsGenotypes && ! (analysis instanceof PopulationAnalysis);
-            boolean disableForPools = pathToHapmapPoolFile == null;
+            boolean disableForPools = (pathToHapmapPoolFile == null && analysis instanceof PooledGenotypeConcordance);
             boolean disable = disableForGenotyping | disableForPopulation | disableForPools;
             String causeName = disableForGenotyping ? "population" : (disableForPopulation ? "genotype" : ( disableForPools ? "pool" : null ));
             if ( disable ) {