From 75f87db468e27b51d124bf854eea7c7b30284d9f Mon Sep 17 00:00:00 2001 From: Ryan Poplin Date: Tue, 17 Jan 2012 15:02:45 -0500 Subject: [PATCH] Replacing Mills file with new gold standard indel set in the resource bundle for release with v1.5 --- .../sting/queue/qscripts/GATKResourcesBundle.scala | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala index 8c9063c29..22ac52453 100755 --- a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala +++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala @@ -134,8 +134,8 @@ class GATKResourcesBundle extends QScript { addResource(new Resource("/humgen/1kg/processing/official_release/phase1/ALL.wgs.VQSR_consensus_biallelic.20101123.indels.sites.vcf", "1000G_biallelic.indels", b37, true, false)) - addResource(new Resource("/humgen/gsa-hpprojects/GATK/data/Comparisons/Validated/Mills_Devine_Indels_2011/ALL.wgs.indels_mills_devine_hg19_leftAligned_collapsed_double_hit.sites.vcf", - "Mills_Devine_2hit.indels", b37, true, true)) + addResource(new Resource("/humgen/gsa-hpprojects/GATK/data/Comparisons/Unvalidated/GoldStandardIndel/gold.standard.indel.MillsAnd1000G.b37.vcf", + "Mills_and_1000G_gold_standard.indels", b37, true, true)) // // example call set for wiki tutorial