diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java index 0014b91fa..fd2d53827 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java @@ -116,7 +116,7 @@ public class PrintReadsWalker extends ReadWalker { * @return the SAMFileWriter, so that the next reduce can emit to the same source */ public SAMFileWriter reduce( SAMRecord read, SAMFileWriter output ) { - out.addAlignment(read); + output.addAlignment(read); return output; }