diff --git a/java/src/org/broadinstitute/sting/gatk/arguments/GATKArgumentCollection.java b/java/src/org/broadinstitute/sting/gatk/arguments/GATKArgumentCollection.java index 210f2c580..1f758b0f6 100755 --- a/java/src/org/broadinstitute/sting/gatk/arguments/GATKArgumentCollection.java +++ b/java/src/org/broadinstitute/sting/gatk/arguments/GATKArgumentCollection.java @@ -365,7 +365,7 @@ public class GATKArgumentCollection { if ( BAQGOP != other.BAQGOP ) return false; if ((other.performanceLog == null && this.performanceLog != null) || - (other.performanceLog != null && !other.performanceLog.equals(this.performanceLog))) { + (other.performanceLog != null && !other.performanceLog.equals(this.performanceLog))) return false; return true;