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forgot to remove a debug line. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5246 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
carneiro 2011-02-15 16:25:48 +00:00
parent e45b699ac0
commit 7598f5f6a7
1 changed files with 1 additions and 2 deletions
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3
lua/remapAmplicons.lua
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@ -53,7 +53,6 @@ local function processSamHeaderLine(l, amplicons)
if not header.sq then header.sq = {} end if not header.sq then header.sq = {} end
local ampName = l:match("@SQ%s+SN:ps%d+_([%w%p_]+).*") local ampName = l:match("@SQ%s+SN:ps%d+_([%w%p_]+).*")
local chr = amplicons[ampName].chr local chr = amplicons[ampName].chr
print("DEBUG: ", ampName, chr)
header.sq[chr] = chrlength[chr] header.sq[chr] = chrlength[chr]
end end
end end
@ -84,4 +83,4 @@ for l in io.lines(samFile) do
end end
printHeader() printHeader()
printReads() printReads()