forgot to remove a debug line.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5246 348d0f76-0448-11de-a6fe-93d51630548a
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@ -53,7 +53,6 @@ local function processSamHeaderLine(l, amplicons)
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if not header.sq then header.sq = {} end
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local ampName = l:match("@SQ%s+SN:ps%d+_([%w%p_]+).*")
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local chr = amplicons[ampName].chr
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print("DEBUG: ", ampName, chr)
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header.sq[chr] = chrlength[chr]
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end
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end
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@ -84,4 +83,4 @@ for l in io.lines(samFile) do
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end
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printHeader()
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printReads()
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printReads()
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