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Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable

This commit is contained in:
Ryan Poplin 2011-11-09 22:29:40 -05:00
parent 8942406aa2 24712c0221
commit 74a18d3de8
1 changed files with 2 additions and 2 deletions
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4
public/java/src/org/broadinstitute/sting/gatk/walkers/indels/PairHMMIndelErrorModel.java
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@ -622,7 +622,7 @@ public class PairHMMIndelErrorModel {
if ( b1[i]!= b2[i] )
return i;
}
return 0; // sanity check
return b1.length;
}
private int computeFirstDifferingPosition(double[] b1, double[] b2) {
@ -633,7 +633,7 @@ public class PairHMMIndelErrorModel {
if ( MathUtils.compareDoubles(b1[i], b2[i]) != 0 )
return i;
}
return 0; // sanity check
return b1.length;
}
private final static double[] getHaplotypeLikelihoods(final int numHaplotypes, final int readCounts[], final double readLikelihoods[][]) {