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MathUtils.randomSubset() now uses Collections.shuffle() (indirectly, through the other methods 

that are tested), resulting in slightly different numbers of calls to the RNG, and ultimately
different sets of selected variants.

This commits updates the md5 values for the validation site selector integration test to reflect
these new random subsets of variants that are selected.
This commit is contained in:
Chris Hartl 2013-03-29 14:52:10 -04:00
parent ed98fc6a1f
commit 74a17359a8
1 changed files with 5 additions and 5 deletions
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10
protected/java/test/org/broadinstitute/sting/gatk/walkers/validation/ValidationSiteSelectorIntegrationTest.java
View File

@ -79,7 +79,7 @@ public class ValidationSiteSelectorIntegrationTest extends WalkerTest {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString(sampleNone + freqUnif + "--variant " + testfile),
1,
Arrays.asList("b8a988757ac1f206d123140da5a3e778")
Arrays.asList("658c70cbb93faed8ca18e51cd6dd593f")
);
executeTest("testNoSampleSelectionFreqUniform--" + testfile, spec);
@ -91,7 +91,7 @@ public class ValidationSiteSelectorIntegrationTest extends WalkerTest {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString(sampleNone + freqAF + "--variant " + testfile),
1,
Arrays.asList("542d5d5ff8c64da7b077bab4b950a9a3")
Arrays.asList("90411433ea42846352b767da735af53b")
);
executeTest("testNoSampleSelectionFreqAF--" + testfile, spec);
@ -103,7 +103,7 @@ public class ValidationSiteSelectorIntegrationTest extends WalkerTest {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString(sampleGT + freqUnif + "--variant " + testfile),
1,
Arrays.asList("7385b17eed7f4ff0f6e82e60c3334ce7")
Arrays.asList("2afabd447185cf017f60c85380902117")
);
executeTest("testPolyGTFreqUniform--" + testfile, spec);
@ -115,7 +115,7 @@ public class ValidationSiteSelectorIntegrationTest extends WalkerTest {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString(sampleGT + freqAF + "--variant " + testfile),
1,
Arrays.asList("0ee4a565a0d4f6b6942abd72a373becd")
Arrays.asList("381e1a2f0e1908b4d7cba5d6361cf5aa")
);
executeTest("testPolyGTFreqAF--" + testfile, spec);
@ -127,7 +127,7 @@ public class ValidationSiteSelectorIntegrationTest extends WalkerTest {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString(sampleGL + freqAF + "--variant " + testfile),
1,
Arrays.asList("0ee4a565a0d4f6b6942abd72a373becd")
Arrays.asList("381e1a2f0e1908b4d7cba5d6361cf5aa")
);
executeTest("testPolyGLFreqAF--" + testfile, spec);