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helper script to the papuan processing... minor updates 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5489 348d0f76-0448-11de-a6fe-93d51630548a
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carneiro 2011-03-22 14:11:02 +00:00
parent af7f78e8ba
commit 748787c509
1 changed files with 1 additions and 1 deletions
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2
scala/qscript/oneoffs/carneiro/justClean.scala
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@ -64,7 +64,7 @@ class justClean extends QScript {
clean.U = Some(org.broadinstitute.sting.gatk.arguments.ValidationExclusion.TYPE.NO_READ_ORDER_VERIFICATION) // todo -- update clean with the last consensus between Tim, Matt and Eric. This is ugly!
clean.jobName = queueLogDir + outBam + ".clean"
clean.jarFile = GATKjar
clean.memoryLimit = Some(6)
clean.memoryLimit = Some(12)
clean.scatterCount = 84
add(clean);