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Further tweaking of test timeouts 

Increase one timeout, restore others that were only timing out due to the
Java crypto lib bug to their original values.

-DOUBLE timeout for NanoSchedulerUnitTest.testNanoSchedulerInLoop()

-REDUCE timeout for EngineFeaturesIntegrationTest to its original value

-REDUCE timeout for MaxRuntimeIntegrationTest to its original value

-REDUCE timeout for GATKRunReportUnitTest to its original value
This commit is contained in:
David Roazen 2013-03-15 12:25:21 -04:00
parent e681df68c9
commit 742a7651e9
3 changed files with 4 additions and 5 deletions
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2
public/java/test/org/broadinstitute/sting/gatk/EngineFeaturesIntegrationTest.java
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@ -117,7 +117,7 @@ public class EngineFeaturesIntegrationTest extends WalkerTest {
// //
// Loop over errors to throw, make sure they are the errors we get back from the engine, regardless of NT type // Loop over errors to throw, make sure they are the errors we get back from the engine, regardless of NT type
// //
@Test(enabled = true, dataProvider = "EngineErrorHandlingTestProvider", timeOut = 300 * 1000 ) @Test(enabled = true, dataProvider = "EngineErrorHandlingTestProvider", timeOut = 60 * 1000 )
public void testEngineErrorHandlingTestProvider(final EngineErrorHandlingTestProvider cfg) { public void testEngineErrorHandlingTestProvider(final EngineErrorHandlingTestProvider cfg) {
for ( int i = 0; i < cfg.iterationsToTest; i++ ) { for ( int i = 0; i < cfg.iterationsToTest; i++ ) {
final String root = "-T ErrorThrowing -R " + exampleFASTA; final String root = "-T ErrorThrowing -R " + exampleFASTA;

5
public/java/test/org/broadinstitute/sting/gatk/MaxRuntimeIntegrationTest.java
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@ -39,8 +39,7 @@ import java.util.concurrent.TimeUnit;
* *
*/ */
public class MaxRuntimeIntegrationTest extends WalkerTest { public class MaxRuntimeIntegrationTest extends WalkerTest {
// Assume a ridiculous amount of startup overhead to allow for running these tests on slow farm nodes private static final long STARTUP_TIME = TimeUnit.NANOSECONDS.convert(20, TimeUnit.SECONDS);
private static final long STARTUP_TIME = TimeUnit.NANOSECONDS.convert(300, TimeUnit.SECONDS);
private class MaxRuntimeTestProvider extends TestDataProvider { private class MaxRuntimeTestProvider extends TestDataProvider {
final long maxRuntime; final long maxRuntime;
@ -69,7 +68,7 @@ public class MaxRuntimeIntegrationTest extends WalkerTest {
// //
// Loop over errors to throw, make sure they are the errors we get back from the engine, regardless of NT type // Loop over errors to throw, make sure they are the errors we get back from the engine, regardless of NT type
// //
@Test(enabled = true, dataProvider = "MaxRuntimeProvider", timeOut = 600 * 1000) @Test(enabled = true, dataProvider = "MaxRuntimeProvider", timeOut = 60 * 1000)
public void testMaxRuntime(final MaxRuntimeTestProvider cfg) { public void testMaxRuntime(final MaxRuntimeTestProvider cfg) {
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
"-T PrintReads -R " + hg18Reference "-T PrintReads -R " + hg18Reference

2
public/java/test/org/broadinstitute/sting/utils/nanoScheduler/NanoSchedulerUnitTest.java
View File

@ -216,7 +216,7 @@ public class NanoSchedulerUnitTest extends BaseTest {
nanoScheduler.shutdown(); nanoScheduler.shutdown();
} }
@Test(enabled = true && ! DEBUG, dataProvider = "NanoSchedulerBasicTest", dependsOnMethods = "testMultiThreadedNanoScheduler", timeOut = NANO_SCHEDULE_MAX_RUNTIME) @Test(enabled = true && ! DEBUG, dataProvider = "NanoSchedulerBasicTest", dependsOnMethods = "testMultiThreadedNanoScheduler", timeOut = 2 * NANO_SCHEDULE_MAX_RUNTIME)
public void testNanoSchedulerInLoop(final NanoSchedulerBasicTest test) throws InterruptedException { public void testNanoSchedulerInLoop(final NanoSchedulerBasicTest test) throws InterruptedException {
if ( test.bufferSize > 1) { if ( test.bufferSize > 1) {
logger.warn("Running " + test); logger.warn("Running " + test);