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gatk-3.8
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Change Long to long

This commit is contained in:
Mark DePristo 2013-04-30 09:21:10 -04:00
parent 0e7e6d35d8
commit 73fcacbf1b
1 changed files with 2 additions and 2 deletions
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4
public/java/src/org/broadinstitute/sting/gatk/datasources/reads/GATKBAMIndex.java
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@ -87,7 +87,7 @@ public class GATKBAMIndex {
private SeekableFileStream fileStream; private SeekableFileStream fileStream;
private SeekableBufferedStream bufferedStream; private SeekableBufferedStream bufferedStream;
private Long fileLength; private long fileLength;
public GATKBAMIndex(final File file) { public GATKBAMIndex(final File file) {
mFile = file; mFile = file;
@ -320,7 +320,7 @@ public class GATKBAMIndex {
try { try {
bufferedStream.close(); bufferedStream.close();
fileStream.close(); fileStream.close();
fileLength=null; fileLength = -1;
} }
catch (IOException exc) { catch (IOException exc) {
throw new ReviewedStingException("Unable to close index file " + mFile, exc); throw new ReviewedStingException("Unable to close index file " + mFile, exc);