diff --git a/public/java/src/org/broadinstitute/sting/gatk/datasources/reads/GATKBAMIndex.java b/public/java/src/org/broadinstitute/sting/gatk/datasources/reads/GATKBAMIndex.java index 9a6b9b521..6c7a6c867 100644 --- a/public/java/src/org/broadinstitute/sting/gatk/datasources/reads/GATKBAMIndex.java +++ b/public/java/src/org/broadinstitute/sting/gatk/datasources/reads/GATKBAMIndex.java @@ -87,7 +87,7 @@ public class GATKBAMIndex { private SeekableFileStream fileStream; private SeekableBufferedStream bufferedStream; - private Long fileLength; + private long fileLength; public GATKBAMIndex(final File file) { mFile = file; @@ -320,7 +320,7 @@ public class GATKBAMIndex { try { bufferedStream.close(); fileStream.close(); - fileLength=null; + fileLength = -1; } catch (IOException exc) { throw new ReviewedStingException("Unable to close index file " + mFile, exc);