From 73d6167bd67153d53a22938c914a5e15f93e3f24 Mon Sep 17 00:00:00 2001 From: ebanks Date: Sun, 14 Mar 2010 23:18:49 +0000 Subject: [PATCH] Fixing broken integration tests git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2998 348d0f76-0448-11de-a6fe-93d51630548a --- .../varianteval2/VariantEval2IntegrationTest.java | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/java/test/org/broadinstitute/sting/oneoffprojects/walkers/varianteval2/VariantEval2IntegrationTest.java b/java/test/org/broadinstitute/sting/oneoffprojects/walkers/varianteval2/VariantEval2IntegrationTest.java index 5bba572de..5f3034f09 100755 --- a/java/test/org/broadinstitute/sting/oneoffprojects/walkers/varianteval2/VariantEval2IntegrationTest.java +++ b/java/test/org/broadinstitute/sting/oneoffprojects/walkers/varianteval2/VariantEval2IntegrationTest.java @@ -20,8 +20,8 @@ public class VariantEval2IntegrationTest extends WalkerTest { @Test public void testVE2Simple() { HashMap expectations = new HashMap(); - expectations.put("-L 1:1-10,000,000", "8f6d7d4ded62c4558b4c72053ca2f3d5"); - expectations.put("-L 1:1-10,000,000 -family NA19238+NA19239=NA19240 -MVQ 0", "3adaab00a5475504ede7bb13b2c8736f"); + expectations.put("-L 1:1-10,000,000", "78e4cd917ddef84cdb3c6e95299483b4"); + expectations.put("-L 1:1-10,000,000 -family NA19238+NA19239=NA19240 -MVQ 0", "a15be04ebe52fd0775695b016e016975"); for ( Map.Entry entry : expectations.entrySet() ) { String extraArgs = entry.getKey(); @@ -41,10 +41,10 @@ public class VariantEval2IntegrationTest extends WalkerTest { " -B dbsnp_130,dbSNP," + GATKDataLocation + "dbsnp_130_b36.rod" + " -B comp_hapmap,VCF," + validationDataLocation + "CEU_hapmap_nogt_23.vcf"; - String eqMD5s = "5b51146d4282a236f2b6b73fe585a305"; // next two examples should be the same! + String eqMD5s = "d21d1dcbebcfade3d056af5f907e6f56"; // next two examples should be the same! expectations.put("", eqMD5s); expectations.put(" -known comp_hapmap -known dbsnp", eqMD5s); - expectations.put(" -known comp_hapmap", "bcb832f75afd63e2f66bc5490f89cac3"); + expectations.put(" -known comp_hapmap", "573a50b1f4ae338ef6937720a7ca5f34"); for ( Map.Entry entry : expectations.entrySet() ) { String extraArgs2 = entry.getKey(); @@ -62,7 +62,7 @@ public class VariantEval2IntegrationTest extends WalkerTest { String extraArgs = "-L 1:1-10,000,000 -family NA19238+NA19239=NA19240 -MVQ 30"; WalkerTestSpec spec = new WalkerTestSpec( root + " " + extraArgs + " -o %s -outputVCF %s", 2, - Arrays.asList("2c9e03fe3d1c9aa32fbdbf74a5758e85", "a3ce1d70d8ae3874807e9d61994d42af")); + Arrays.asList("00a38a8e7da6c1880c49749563eb0dcf", "a3ce1d70d8ae3874807e9d61994d42af")); executeTest("testVE2WriteVCF", spec); } }