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Fixing broken integration tests 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2998 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2010-03-14 23:18:49 +00:00
parent 4dd7c5972c
commit 73d6167bd6
1 changed files with 5 additions and 5 deletions
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10
java/test/org/broadinstitute/sting/oneoffprojects/walkers/varianteval2/VariantEval2IntegrationTest.java
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@ -20,8 +20,8 @@ public class VariantEval2IntegrationTest extends WalkerTest {
@Test
public void testVE2Simple() {
HashMap<String, String> expectations = new HashMap<String, String>();
expectations.put("-L 1:1-10,000,000", "8f6d7d4ded62c4558b4c72053ca2f3d5");
expectations.put("-L 1:1-10,000,000 -family NA19238+NA19239=NA19240 -MVQ 0", "3adaab00a5475504ede7bb13b2c8736f");
expectations.put("-L 1:1-10,000,000", "78e4cd917ddef84cdb3c6e95299483b4");
expectations.put("-L 1:1-10,000,000 -family NA19238+NA19239=NA19240 -MVQ 0", "a15be04ebe52fd0775695b016e016975");
for ( Map.Entry<String, String> entry : expectations.entrySet() ) {
String extraArgs = entry.getKey();
@ -41,10 +41,10 @@ public class VariantEval2IntegrationTest extends WalkerTest {
" -B dbsnp_130,dbSNP," + GATKDataLocation + "dbsnp_130_b36.rod" +
" -B comp_hapmap,VCF," + validationDataLocation + "CEU_hapmap_nogt_23.vcf";
String eqMD5s = "5b51146d4282a236f2b6b73fe585a305"; // next two examples should be the same!
String eqMD5s = "d21d1dcbebcfade3d056af5f907e6f56"; // next two examples should be the same!
expectations.put("", eqMD5s);
expectations.put(" -known comp_hapmap -known dbsnp", eqMD5s);
expectations.put(" -known comp_hapmap", "bcb832f75afd63e2f66bc5490f89cac3");
expectations.put(" -known comp_hapmap", "573a50b1f4ae338ef6937720a7ca5f34");
for ( Map.Entry<String, String> entry : expectations.entrySet() ) {
String extraArgs2 = entry.getKey();
@ -62,7 +62,7 @@ public class VariantEval2IntegrationTest extends WalkerTest {
String extraArgs = "-L 1:1-10,000,000 -family NA19238+NA19239=NA19240 -MVQ 30";
WalkerTestSpec spec = new WalkerTestSpec( root + " " + extraArgs + " -o %s -outputVCF %s",
2,
Arrays.asList("2c9e03fe3d1c9aa32fbdbf74a5758e85", "a3ce1d70d8ae3874807e9d61994d42af"));
Arrays.asList("00a38a8e7da6c1880c49749563eb0dcf", "a3ce1d70d8ae3874807e9d61994d42af"));
executeTest("testVE2WriteVCF", spec);
}
}