From 73a14a985b0a9a4ce8aeb304b0e084f91e8aa346 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 26 Mar 2010 18:55:12 +0000
Subject: [PATCH] Moving VariantsToVCF to core.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3078 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../variantstovcf => gatk/walkers}/VariantsToVCF.java        | 5 +----
 .../walkers}/VariantsToVCFIntegrationTest.java               | 2 +-
 2 files changed, 2 insertions(+), 5 deletions(-)
 rename java/src/org/broadinstitute/sting/{playground/gatk/walkers/variantstovcf => gatk/walkers}/VariantsToVCF.java (94%)
 rename java/test/org/broadinstitute/sting/{playground/gatk/walkers/variantstovcf => gatk/walkers}/VariantsToVCFIntegrationTest.java (97%)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/VariantsToVCF.java b/java/src/org/broadinstitute/sting/gatk/walkers/VariantsToVCF.java
similarity index 94%
rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/VariantsToVCF.java
rename to java/src/org/broadinstitute/sting/gatk/walkers/VariantsToVCF.java
index cabbbb9ed..80c135c1d 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/VariantsToVCF.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/VariantsToVCF.java
@@ -1,4 +1,4 @@
-package org.broadinstitute.sting.playground.gatk.walkers.variantstovcf;
+package org.broadinstitute.sting.gatk.walkers;
 
 import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
 import org.broadinstitute.sting.gatk.contexts.ReferenceContext;
@@ -6,9 +6,6 @@ import org.broadinstitute.sting.gatk.contexts.variantcontext.VariantContext;
 import org.broadinstitute.sting.gatk.contexts.variantcontext.Allele;
 import org.broadinstitute.sting.gatk.refdata.*;
 import org.broadinstitute.sting.gatk.refdata.utils.RODRecordList;
-import org.broadinstitute.sting.gatk.walkers.RodWalker;
-import org.broadinstitute.sting.gatk.walkers.Requires;
-import org.broadinstitute.sting.gatk.walkers.RMD;
 import org.broadinstitute.sting.utils.genotype.vcf.*;
 import org.broadinstitute.sting.utils.cmdLine.Argument;
 
diff --git a/java/test/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/VariantsToVCFIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/VariantsToVCFIntegrationTest.java
similarity index 97%
rename from java/test/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/VariantsToVCFIntegrationTest.java
rename to java/test/org/broadinstitute/sting/gatk/walkers/VariantsToVCFIntegrationTest.java
index f12c27870..e2f578290 100755
--- a/java/test/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/VariantsToVCFIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/VariantsToVCFIntegrationTest.java
@@ -1,4 +1,4 @@
-package org.broadinstitute.sting.playground.gatk.walkers.variantstovcf;
+package org.broadinstitute.sting.gatk.walkers;
 
 import org.broadinstitute.sting.WalkerTest;
 import org.junit.Test;