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Fix for the case of requesting genotype for a sample that doesn't exist in a VariantContext

This commit is contained in:
Ryan Poplin 2011-07-12 13:55:21 -04:00
parent cfe43e3971
commit 73735863b0
1 changed files with 4 additions and 1 deletions
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5
public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContext.java
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@ -867,7 +867,10 @@ public class VariantContext implements Feature { // to enable tribble intergrati
for ( String name : sampleNames ) { for ( String name : sampleNames ) {
if ( map.containsKey(name) ) throw new IllegalArgumentException("Duplicate names detected in requested samples " + sampleNames); if ( map.containsKey(name) ) throw new IllegalArgumentException("Duplicate names detected in requested samples " + sampleNames);
map.put(name, getGenotype(name)); final Genotype g = getGenotype(name);
if ( g != null ) {
map.put(name, g);
}
} }
return map; return map;