diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/ReadBackedPhasingWalker.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/ReadBackedPhasingWalker.java index 1d9616aac..fbe6e5b5a 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/ReadBackedPhasingWalker.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/ReadBackedPhasingWalker.java @@ -242,7 +242,7 @@ public class ReadBackedPhasingWalker extends RodWalker KEYS_TO_KEEP_IN_REDUCED_VCF = new HashSet(Arrays.asList("PQ")); + private static final Set KEYS_TO_KEEP_IN_REDUCED_VCF = new HashSet(Arrays.asList(PQ_KEY)); private VariantContext reduceVCToSamples(VariantContext vc, List samplesToPhase) { // for ( String sample : samplesToPhase )