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require that snps be biallelic before we pass them to the TiTv calculation. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3316 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2010-05-06 22:33:00 +00:00
parent 3b52ac67e0
commit 72e030a670
1 changed files with 1 additions and 0 deletions
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1
java/src/org/broadinstitute/sting/gatk/walkers/varianteval/SimpleMetricsByAC.java
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@ -143,6 +143,7 @@ public class SimpleMetricsByAC extends VariantEvaluator {
if (eval != null && if (eval != null &&
eval.isSNP() && eval.isSNP() &&
eval.isBiallelic() &&
eval.hasGenotypes()) { eval.hasGenotypes()) {
if ( metrics == null ) if ( metrics == null )
metrics = new MetricsByAc(2 * eval.getNSamples()); metrics = new MetricsByAc(2 * eval.getNSamples());